Software

ipd

Inference on Predicted Data

CRAN status CRAN downloads

An open-source R package for downstream modeling of an outcome and its associated features where a potentially sizable portion of the outcome data has been imputed by an AI/ML prediction algorithm. The package implements several recently proposed methods for inference on predicted data (PostPI, PPI, PPI++, PSPA) with a single, user-friendly wrapper function.

CRAN | GitHub | Paper (Bioinformatics)

install.packages("ipd")

scorcher

Accessible Deep Learning in R

An open-source R package that provides high-level, pipe-compatible functionality for building and fitting deep learning models using the torch library in R. Designed to let clinical and cancer researchers build complex AI/ML models using intuitive, sequential steps rather than hundreds of lines of code.

Supported by a Sloan Precision Oncology Technology Dissemination Award at Fred Hutchinson Cancer Center.

GitHub | UW Biostatistics feature

# Install development version
devtools::install_github("jtleek/scorcher")